PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03799.1_g00004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 411aa    MW: 44719.6 Da    PI: 9.4222
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03799.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.82.9e-06361386227
                              -S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                              ++++C+ff ++  Ck G++C + H+p
  Rsa1.0_03799.1_g00004.1 361 GQRPCMFFGKGKGCKLGESCLYLHDP 386
                              789*******99************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.676359387IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MGRNVKKARV SWPSDSMLCQ VKMFQKEDYP AKVGAQTCSK SKASKDLHHG TVYSTRPPNI  60
PLITWKPPPK FILSDHWLVA SGEESTETGS ENLRIAKVLE AFYPHHSLIP PTRPSISPAA  120
VQVDDTITPT IRLTPIEEDE DEQPESPAIQ SSQSSKTPPS QFGHGPDMTL AALLNTKEQG  180
SPVDADLLVK FLTDPIIINN LLNAAAAKPL LETGNNNNTT KPPPQHVTTS SANSPPGNGV  240
TPVLAAHLVL NTYPLSCARK PLPRVEESLE PSSVVVSEPQ NQSSPTSGTW NMSRVLESAG  300
TVTDTQSAYQ MNITRDDYFK NLIREHGGVV APATNKYKRR VANNNNNNNN DEKKALAKGK  360
GQRPCMFFGK GKGCKLGESC LYLHDPSKRL STYDVAGAAA APRAKRLKFR T
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013650787.10.0PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 68-like
SwissprotQ9FH615e-89C3H68_ARATH; Zinc finger CCCH domain-containing protein 68
TrEMBLA0A078I2Y00.0A0A078I2Y0_BRANA; BnaA07g12650D protein
STRINGfgenesh2_kg.8__2795__AT5G66270.15e-94(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87041112